IL_2L1F_071

3D structure

PDB id

2L1F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2L1F_071 not in the Motif Atlas

Geometric match to IL_4LCK_008

Geometric discrepancy: 0.3403

The information below is about IL_4LCK_008

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_79895.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

2L1F|12|B|G|713
2L1F|12|B|A|714
2L1F|12|B|C|715
2L1F|12|B|C|716
*
2L1F|12|B|G|748
2L1F|12|B|C|749

Current chains

Chain B

RNA (66-MER)

Nearby chains