IL_2L94_008

3D structure

PDB id

2L94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HIV-1 frameshift site RNA bound to a small molecule inhibitor of viral replication

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UC*GGGAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2L94_008 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.3525

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

2L94|8|A|U|8
2L94|8|A|C|9
*
2L94|8|A|G|34
2L94|8|A|G|35
2L94|8|A|G|36
2L94|8|A|A|37
2L94|8|A|A|38

Current chains

Chain A

RNA_(45-MER)

Nearby chains