Motif IL_88739.3 Version IL_88739.3 of this group appears in releases 3.86 to 3.86
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6XJQ_003 | 6XJQ | 0.7348 | 2 | A | Self-alkylating ribozyme (58-MER) | U | 42 | G | 45 | C | 46 | * | G | 16 | G | 17 | cWW | cWW | ||
| 2 | IL_1U9S_002 | 1U9S | 0.5225 | 2 | Major groove intercalation | A | RIBONUCLEASE P | G | 111 | A | 114 | G | 115 | * | C | 228 | C | 229 | cWW | cWW | |
| 3 | IL_7A0S_068 | 7A0S | 0.4891 | 1 | Major groove minor groove platform; mini C-loop | X | LSU rRNA | G | 1838 | A | 1840 | G | 1841 | * | C | 1876 | C | 1877 | cWW | ncWS | cWW |
| 4 | IL_7RQB_073 | 7RQB | 0.3889 | 1 | Minor groove platform | 1A | LSU rRNA | G | 1846 | A | 1848 | G | 1849 | * | C | 1893 | C | 1894 | cWW | ncWS | cWW |
| 5 | IL_1U9S_005 | 1U9S | 0.2439 | 1 | Minor groove platform, major groove intercalation | A | RIBONUCLEASE P | C | 136 | G | 138 | C | 139 | * | G | 161 | G | 162 | cWW | ntHS | cWW |
| 6 | IL_5J7L_314 | 5J7L | 0.1712 | 1 | Minor groove platform, major groove intercalation | DA | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | ntHS | cWW |
| 7 | IL_4V9F_066 | 4V9F | 0.2072 | 1 | Minor groove platform, major groove intercalation | 0 | LSU rRNA | C | 1893 | A | 1895 | G | 1896 | * | C | 1943 | G | 1944 | cWW | cWW | |
| 8 | IL_7RQB_071 | 7RQB | 0.2102 | 1 | Minor groove platform, major groove intercalation | 1A | LSU rRNA | C | 1837 | G | 1839 | G | 1840 | * | C | 1902 | G | 1903 | cWW | cWW | |
| 9 | IL_5TBW_084 | 5TBW | 0.1908 | 1 | Major groove intercalation | 1 | LSU rRNA | C | 2196 | A | 2198 | G | 2199 | * | C | 2245 | G | 2246 | cWW | cWW | |
| 10 | IL_8C3A_089 | 8C3A | 0.1821 | 1 | Major groove intercalation (H) | 1 | LSU rRNA | C | 2174 | A | 2176 | G | 2177 | * | C | 2223 | G | 2224 | cWW | cWW | |
| 11 | IL_7A0S_066 | 7A0S | 0.0000 | 1 | Minor groove platform, major groove intercalation | X | LSU rRNA | C | 1829 | G | 1831 | G | 1832 | * | C | 1885 | G | 1886 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGG*CG | 3 |
| CCAG*CG | 3 |
| GAAG*CC | 2 |
| UAGGC*GG | 1 |
| GAAAG*CC | 1 |
| CAGC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CG* | 3 |
| CA* | 3 |
| AA* | 2 |
| AGG* | 1 |
| AAA* | 1 |
| AG* | 1 |
Release history
| Release | 3.86 |
|---|---|
| Date | 2024-07-17 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Minor groove platform, major groove intercalation (5)
- Major groove intercalation (2)
- (1)
- Major groove minor groove platform; mini C-loop (1)
- Minor groove platform (1)
- Major groove intercalation (H) (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.10 | Avg 0.34 | Max 0.73
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