IL_2LBJ_003

3D structure

PDB id

2LBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Glycyl-tRNA(GCC) anticodon stem-loop from Bacillus subtilis

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LBJ_003 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.3984

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2LBJ|3|A|G|2
2LBJ|3|A|G|3
2LBJ|3|A|C|4
*
2LBJ|3|A|G|14
2LBJ|3|A|U|15
2LBJ|3|A|C|16

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*CP*CP*UP*UP*GP*CP*CP*AP*AP*GP*GP*UP*CP*C)-3')

Nearby chains