IL_2LPT_006

3D structure

PDB id

2LPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular dynamics re-refinement of domain 5 of the Pylaiella littoralis group II intron

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UG*CAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2LPT_006 not in the Motif Atlas

Geometric match to IL_7A0S_005

Geometric discrepancy: 0.208

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

2LPT|4|A|U|9
2LPT|4|A|G|10
*
2LPT|4|A|C|23
2LPT|4|A|A|24
2LPT|4|A|A|25

Current chains

Chain A

RNA_(34-MER)

Nearby chains