2LPT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2LPT_001 | 1/A/14:19 | GNRA | geometric HL_4LFB_007 HL_34789.5 | |
| HL_2LPT_002 | 2/A/14:19 | GNRA | geometric HL_6WPI_001 HL_34789.5 | |
| HL_2LPT_003 | 3/A/14:19 | GNRA | geometric HL_6WPI_001 HL_34789.5 | |
| HL_2LPT_004 | 4/A/14:19 | GNRA | geometric HL_5TBW_025 NA | |
| HL_2LPT_005 | 5/A/14:19 | GNRA | geometric HL_5M0H_001 HL_34789.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2LPT_001 | 1/A/8:9, 1/A/25:27 | Single stack bend | geometric IL_4C7O_002 IL_15011.4 | |
| IL_2LPT_002 | 1/A/9:10, 1/A/23:25 | Single stack bend with SAM intercalation | geometric IL_2QWY_008 IL_75501.2 | |
| IL_2LPT_003 | 2/A/8:10, 2/A/23:27 | No text annotation | ||
| IL_2LPT_009 | 3/A/8:9, 3/A/25:27 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_2LPT_010 | 3/A/9:10, 3/A/23:25 | Single stack bend with SAM intercalation | geometric IL_2QWY_008 IL_75501.2 | |
| IL_2LPT_005 | 4/A/8:9, 4/A/25:27 | No text annotation | ||
| IL_2LPT_008 | 4/A/8:10, 4/A/23:27 | No text annotation | ||
| IL_2LPT_006 | 4/A/9:10, 4/A/23:25 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_2LPT_007 | 5/A/8:10, 5/A/23:27 | Major groove platform with extra pair | geometric IL_5TBW_087 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2LPT_004 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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