IL_2M4W_010

3D structure

PDB id

2M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

single G-bulge in a conserved regulatory region of the HEV genome

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAA*UGUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2M4W_010 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.3985

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

2M4W|10|A|G|2
2M4W|10|A|A|3
2M4W|10|A|A|4
*
2M4W|10|A|U|13
2M4W|10|A|G|14
2M4W|10|A|U|15
2M4W|10|A|C|16

Current chains

Chain A

RNA (5'-R(*GP*GP*AP*AP*UP*CP*GP*AP*AP*AP*GP*AP*UP*GP*UP*CP*C)-3')

Nearby chains