2M4W Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2M4W_001 | 1/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_002 | 2/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_003 | 3/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_004 | 4/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_005 | 5/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_006 | 6/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_007 | 7/A/6:11 | GNRA | geometric HL_5B2T_003 HL_34789.5 | |
| HL_2M4W_008 | 8/A/6:11 | GNRA | geometric HL_5O7H_001 NA | |
| HL_2M4W_009 | 9/A/6:11 | GNRA | geometric HL_7A0S_063 HL_34789.5 | |
| HL_2M4W_010 | 10/A/6:11 | GNRA | geometric HL_5O7H_001 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2M4W_001 | 1/A/2:5, 1/A/12:16 | No text annotation | ||
| IL_2M4W_002 | 2/A/3:5, 2/A/12:15 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 NA | |
| IL_2M4W_003 | 3/A/3:5, 3/A/12:15 | Other IL | geometric IL_5TBW_064 NA | |
| IL_2M4W_004 | 4/A/3:5, 4/A/12:15 | Other IL | geometric IL_5TBW_064 NA | |
| IL_2M4W_005 | 5/A/2:4, 5/A/13:16 | No text annotation | ||
| IL_2M4W_012 | 6/A/3:4, 6/A/13:15 | Major groove platform | geometric IL_8VTW_351 NA | |
| IL_2M4W_007 | 7/A/3:4, 7/A/13:15 | No text annotation | geometric IL_9FN2_003 IL_48076.9 | |
| IL_2M4W_008 | 8/A/3:4, 8/A/13:15 | No text annotation | geometric IL_8GLP_012 IL_48076.9 | |
| IL_2M4W_009 | 9/A/2:5, 9/A/12:16 | No text annotation | ||
| IL_2M4W_010 | 10/A/2:4, 10/A/13:16 | Major groove platform with extra cWW | geometric IL_5D8H_003 IL_36931.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2M4W_011 | No text annotation | ||
| IL_2M4W_006 | Other IL | ||
| IL_2M4W_013 | No text annotation | ||
| IL_2M4W_014 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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