IL_2MHI_001

3D structure

PDB id

2MHI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the CR4/5 domain of medaka telomerase RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

2MHI|1|A|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MHI_001 not in the Motif Atlas

Geometric match to IL_3MXH_003

Geometric discrepancy: 0.3865

The information below is about IL_3MXH_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

2MHI|1|A|G|13
2MHI|1|A|U|14
2MHI|1|A|C|15
*
2MHI|1|A|G|25
2MHI|1|A|C|26

Current chains

Chain A

Medaka telomerase RNA

Nearby chains