IL_2MQV_005

3D structure

PDB id

2MQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of the U5-primer binding site (U5-PBS) domain of murine leukemia virus RNA genome bound to the retroviral nucleocapsid protein

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAG*CGU

Length

6 nucleotides

Bulged bases

2MQV|2|B|G|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MQV_005 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.3982

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2MQV|2|B|G|97
2MQV|2|B|A|98
2MQV|2|B|G|99
*
2MQV|2|B|C|154
2MQV|2|B|G|155
2MQV|2|B|U|156

Current chains

Chain B

RNA (68-MER)

Nearby chains