IL_2MS1_001

3D structure

PDB id

2MS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution NMR structure of tRNApro:MLV Nucleocapsid Protein (1:1) Complex

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CU*GUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2MS1_001 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2373

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

2MS1|6|B|C|31
2MS1|6|B|U|32
*
2MS1|6|B|G|37
2MS1|6|B|U|38
2MS1|6|B|G|39

Current chains

Chain B

tRNApro

Nearby chains