IL_2N3Q_068

3D structure

PDB id

2N3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of the II-III-VI three-way junction from the VS ribozyme

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UAAG*CA

Length

6 nucleotides

Bulged bases

2N3Q|10|A|A|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2N3Q_068 not in the Motif Atlas

Geometric match to IL_4R4V_005

Geometric discrepancy: 0.3816

The information below is about IL_4R4V_005

Detailed Annotation

Intercalated cWS

Broad Annotation

Intercalated cWS

Motif group

IL_16386.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

2N3Q|10|A|U|31
2N3Q|10|A|A|32
2N3Q|10|A|A|33
2N3Q|10|A|G|34
*
2N3Q|10|A|C|45
2N3Q|10|A|A|46

Current chains

Chain A

RNA (62-MER)

Nearby chains