RNA 3D Hub //

2N3Q Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_2N3Q_0011/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0021/A/37:42UNCG
geometric
HL_3U4M_001
HL_61337.3
HL_2N3Q_0032/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0042/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_0053/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0063/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_0074/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0084/A/37:42UNCG
geometric
HL_6DLR_002
HL_61337.3
HL_2N3Q_0095/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0105/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_0116/A/18:21No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_2N3Q_0126/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_0137/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0147/A/37:42UNCG variation
geometric
HL_2CZJ_007
NA
HL_2N3Q_0158/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_0168/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_0179/A/18:21No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_2N3Q_0189/A/37:42UNCG
geometric
HL_1NBS_006
HL_61337.3
HL_2N3Q_01910/A/18:21No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_2N3Q_02010/A/37:42UNCG
geometric
HL_6DLR_002
HL_61337.3
HL_2N3Q_02111/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_02211/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_02312/A/18:21No text annotation
geometric
HL_4WF9_003
HL_75660.7
HL_2N3Q_02412/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_02513/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_02613/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_02714/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_02814/A/37:42UNCG
geometric
HL_6CK5_001
HL_61337.3
HL_2N3Q_02915/A/18:21No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_2N3Q_03015/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_03116/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_03216/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_03317/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_03417/A/37:42UNCG
geometric
HL_4LFB_031
HL_61337.3
HL_2N3Q_03518/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_03618/A/37:42UNCG
geometric
HL_6DLR_002
HL_61337.3
HL_2N3Q_03719/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_03819/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_03920/A/18:21No text annotation
geometric
HL_2ZNI_001
HL_75660.7
HL_2N3Q_04020/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3
HL_2N3Q_04121/A/18:21Mini UNCG
geometric
HL_4YAZ_004
HL_90436.3
HL_2N3Q_04221/A/37:42UNCG
geometric
HL_3IGI_008
HL_61337.3

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_2N3Q_0011/A/5:7,
1/A/56:57		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_2N3Q_0021/A/14:16,
1/A/23:26		No text annotation
IL_2N3Q_0031/A/31:34,
1/A/45:46		No text annotation
IL_2N3Q_0042/A/5:7,
2/A/56:57		No text annotation
IL_2N3Q_0052/A/14:16,
2/A/23:26		No text annotation
IL_2N3Q_0062/A/31:34,
2/A/45:46		No text annotation
IL_2N3Q_0073/A/5:7,
3/A/56:57		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_2N3Q_0663/A/14:15,
3/A/24:26		No text annotation
IL_2N3Q_0093/A/31:34,
3/A/45:46		No text annotation
IL_2N3Q_0104/A/5:7,
4/A/56:57		No text annotation
IL_2N3Q_0114/A/14:16,
4/A/23:26		No text annotation
IL_2N3Q_0124/A/31:34,
4/A/45:46		No text annotation
IL_2N3Q_0135/A/5:7,
5/A/56:57		No text annotation
IL_2N3Q_0145/A/14:16,
5/A/23:26		No text annotation
IL_2N3Q_0155/A/31:34,
5/A/45:46		No text annotation
IL_2N3Q_0166/A/5:7,
6/A/56:57		No text annotation
IL_2N3Q_0176/A/14:16,
6/A/23:26		No text annotation
IL_2N3Q_0186/A/31:34,
6/A/45:46		No text annotation
IL_2N3Q_0197/A/5:7,
7/A/56:57		No text annotation
IL_2N3Q_0207/A/14:16,
7/A/23:26		No text annotation
IL_2N3Q_0217/A/31:34,
7/A/45:46		No text annotation
IL_2N3Q_0228/A/5:7,
8/A/56:57		No text annotation
IL_2N3Q_0238/A/14:16,
8/A/23:26		No text annotation
IL_2N3Q_0248/A/31:34,
8/A/45:46		No text annotation
IL_2N3Q_0259/A/5:7,
9/A/56:57		Single bulged A
geometric
IL_8CRE_122
NA
IL_2N3Q_0679/A/14:15,
9/A/24:26		Single stack bend
geometric
IL_4V9F_005
IL_15011.2
IL_2N3Q_0279/A/31:34,
9/A/45:46		Intercalated cWS
geometric
IL_4R4V_005
IL_16386.5
IL_2N3Q_02810/A/5:7,
10/A/56:57		Single bulged A
geometric
IL_8CRE_122
NA
IL_2N3Q_02910/A/14:16,
10/A/23:26		No text annotation
IL_2N3Q_06810/A/31:34,
10/A/45:46		Intercalated cWS
geometric
IL_4R4V_005
IL_16386.5
IL_2N3Q_03111/A/5:7,
11/A/56:57		No text annotation
IL_2N3Q_03211/A/14:16,
11/A/23:26		No text annotation
IL_2N3Q_03311/A/31:34,
11/A/45:46		No text annotation
IL_2N3Q_03412/A/5:7,
12/A/56:57		No text annotation
IL_2N3Q_03512/A/14:16,
12/A/23:26		No text annotation
IL_2N3Q_03612/A/31:34,
12/A/45:46		No text annotation
IL_2N3Q_03713/A/5:7,
13/A/56:57		No text annotation
IL_2N3Q_06913/A/14:15,
13/A/24:26		Single stack bend
geometric
IL_7QR8_009
NA
IL_2N3Q_06413/A/31:34,
13/A/45:46		No text annotation
IL_2N3Q_04014/A/5:7,
14/A/56:57		No text annotation
IL_2N3Q_04114/A/14:16,
14/A/23:26		No text annotation
IL_2N3Q_04214/A/31:34,
14/A/45:46		No text annotation
IL_2N3Q_04315/A/5:7,
15/A/56:57		No text annotation
IL_2N3Q_04415/A/14:16,
15/A/23:26		No text annotation
IL_2N3Q_04515/A/31:34,
15/A/45:46		Intercalated cWS
geometric
IL_4R4V_005
IL_16386.5
IL_2N3Q_04616/A/5:7,
16/A/56:57		Single bulged A
geometric
IL_8CRE_122
NA
IL_2N3Q_04716/A/14:16,
16/A/23:26		No text annotation
IL_2N3Q_07016/A/31:34,
16/A/45:46		No text annotation
IL_2N3Q_04917/A/5:7,
17/A/56:57		Single bulged A
geometric
IL_5TBW_113
NA
IL_2N3Q_05017/A/14:16,
17/A/23:26		No text annotation
IL_2N3Q_05117/A/31:34,
17/A/45:46		No text annotation
IL_2N3Q_05218/A/5:7,
18/A/56:57		No text annotation
IL_2N3Q_05318/A/14:16,
18/A/23:26		No text annotation
IL_2N3Q_07118/A/31:34,
18/A/45:46		No text annotation
IL_2N3Q_05519/A/5:7,
19/A/56:57		Single bulged A
geometric
IL_1DUQ_002
NA
IL_2N3Q_05619/A/14:16,
19/A/23:26		No text annotation
IL_2N3Q_05719/A/31:34,
19/A/45:46		No text annotation
IL_2N3Q_05820/A/5:7,
20/A/56:57		No text annotation
IL_2N3Q_06520/A/14:15,
20/A/24:26		No text annotation
IL_2N3Q_07220/A/31:34,
20/A/45:46		No text annotation
IL_2N3Q_06121/A/5:7,
21/A/56:57		No text annotation
IL_2N3Q_06221/A/14:16,
21/A/23:26		No text annotation
IL_2N3Q_07321/A/31:34,
21/A/45:46		Intercalated cWS
geometric
IL_4R4V_005
IL_16386.5

Problematic loops

#loop idProblemSequence
IL_2N3Q_008No text annotation
IL_2N3Q_026No text annotation
IL_2N3Q_030No text annotation
IL_2N3Q_038No text annotation
IL_2N3Q_039No text annotation
IL_2N3Q_048No text annotation
IL_2N3Q_054No text annotation
IL_2N3Q_059No text annotation
IL_2N3Q_060No text annotation
IL_2N3Q_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_2N3Q_0011/A/9:12,
1/A/28:29,
1/A/48:54		No text annotation
J3_2N3Q_0022/A/9:12,
2/A/28:29,
2/A/48:54		No text annotation
J3_2N3Q_0033/A/9:12,
3/A/28:29,
3/A/48:54		No text annotation
J3_2N3Q_0044/A/9:12,
4/A/28:29,
4/A/48:54		No text annotation
J3_2N3Q_0055/A/9:12,
5/A/28:29,
5/A/48:54		No text annotation
J3_2N3Q_0066/A/9:12,
6/A/28:29,
6/A/48:54		No text annotation
J3_2N3Q_0077/A/9:12,
7/A/28:29,
7/A/48:54		No text annotation
J3_2N3Q_0088/A/9:12,
8/A/28:29,
8/A/48:54		No text annotation
J3_2N3Q_0099/A/9:12,
9/A/28:29,
9/A/48:54		No text annotation
J3_2N3Q_01010/A/9:12,
10/A/28:29,
10/A/48:54		No text annotation
J3_2N3Q_01111/A/9:12,
11/A/28:29,
11/A/48:54		No text annotation
J3_2N3Q_01212/A/9:12,
12/A/28:29,
12/A/48:54		No text annotation
J3_2N3Q_01313/A/9:12,
13/A/28:29,
13/A/48:54		No text annotation
J3_2N3Q_01414/A/9:12,
14/A/28:29,
14/A/48:54		No text annotation
J3_2N3Q_01515/A/9:12,
15/A/28:29,
15/A/48:54		No text annotation
J3_2N3Q_01616/A/9:12,
16/A/28:29,
16/A/48:54		No text annotation
J3_2N3Q_01717/A/9:12,
17/A/28:29,
17/A/48:54		No text annotation
J3_2N3Q_01818/A/9:12,
18/A/28:29,
18/A/48:54		No text annotation
J3_2N3Q_01919/A/9:12,
19/A/28:29,
19/A/48:54		No text annotation
J3_2N3Q_02020/A/9:12,
20/A/28:29,
20/A/48:54		No text annotation
J3_2N3Q_02121/A/9:12,
21/A/28:29,
21/A/48:54		No text annotation

Problematic loops

No problematic loops


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