IL_2NBX_047

3D structure

PDB id

2NBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the J-K region of EMCV IRES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

AAG*UGAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2NBX_047 not in the Motif Atlas

Geometric match to IL_4P3T_002

Geometric discrepancy: 0.2219

The information below is about IL_4P3T_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01472.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

2NBX|10|A|A|699
2NBX|10|A|A|700
2NBX|10|A|G|701
*
2NBX|10|A|U|722
2NBX|10|A|G|723
2NBX|10|A|A|724
2NBX|10|A|U|725

Current chains

Chain A

IRES RNA (108-MER)

Nearby chains