IL_2O44_005

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACGAG*CUUUGACUC

Length

15 nucleotides

Bulged bases

2O44|1|A|U|99

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_005 not in the Motif Atlas

Geometric match to IL_4LFB_031

Geometric discrepancy: 0.3595

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

2O44|1|A|G|79
2O44|1|A|A|80
2O44|1|A|C|81
2O44|1|A|G|82
2O44|1|A|A|83
2O44|1|A|G|84
*
2O44|1|A|C|96
2O44|1|A|U|97
2O44|1|A|U|98
2O44|1|A|U|99
2O44|1|A|G|100
2O44|1|A|A|101
2O44|1|A|C|102
2O44|1|A|U|103
2O44|1|A|C|104

Current chains

Chain A

23S rRNA

Nearby chains