IL_2O44_007

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAGUAG*CGAACCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_007 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1636

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

2O44|1|A|G|215
2O44|1|A|U|216
2O44|1|A|U|217
2O44|1|A|A|218
2O44|1|A|G|219
2O44|1|A|U|220
2O44|1|A|A|221
2O44|1|A|G|222
*
2O44|1|A|C|230
2O44|1|A|G|231
2O44|1|A|A|232
2O44|1|A|A|233
2O44|1|A|C|234
2O44|1|A|C|235
2O44|1|A|C|236

Current chains

Chain A

23S rRNA

Nearby chains