IL_2O44_011

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAC*GAGUGAAAGAGAAC

Length

18 nucleotides

Bulged bases

2O44|1|A|G|514, 2O44|1|A|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_011 not in the Motif Atlas

Homologous match to IL_7A0S_009

Geometric discrepancy: 0.1928

The information below is about IL_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

10

Unit IDs

2O44|1|A|G|492
2O44|1|A|A|493
2O44|1|A|A|494
2O44|1|A|C|495
*
2O44|1|A|G|506
2O44|1|A|A|507
2O44|1|A|G|508
2O44|1|A|U|509
2O44|1|A|G|510
2O44|1|A|A|511
2O44|1|A|A|512
2O44|1|A|A|513
2O44|1|A|G|514
2O44|1|A|A|515
2O44|1|A|G|516
2O44|1|A|A|517
2O44|1|A|A|518
2O44|1|A|C|519

Current chains

Chain A

23S rRNA

Nearby chains