Motif IL_44923.2 Version IL_44923.2 of this group appears in releases 4.7 to 4.7

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10		11		12	break		13		14		15		16	1-16	2-14	2-15	3-10	4-8	5-9	10-13	11-14	12-13
1	IL_8P9A_243	8P9A	0.1282	2	AR	LSU rRNA	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	*	G	376	A	377	A	378	C	379	cWW	cWS	tSH	cWB	tWH	tSH	tSS		cWW
2	IL_8OI5_015	8OI5	0.1262	2	1	LSU rRNA	G	390	A	391	G	392	U	393	G	394	A	395	A	396	A	397	A	399	G	400	U	401	C	403	*	G	376	A	377	A	378	C	379	cWW	ncWS	tSH	cWB	tWH	tSH	ntSS		cWW
3	IL_9H3G_017	9H3G	0.0855	2	A	LSU rRNA	G	387	A	388	G	389	U	390	C	391	A	392	A	393	A	394	A	396	G	397	U	398	C	400	*	G	373	G	374	A	375	C	376	cWW	ncWS	tSH	cWB	tWH	ntSH	ntSS		cWW
4	IL_8GLP_019	8GLP	0.0000	2	L5	LSU rRNA	G	401	A	402	G	403	U	404	U	405	C	406	A	407	A	408	A	410	G	411	G	412	C	414	*	G	387	A	388	A	389	C	390	cWW	cWS	tSH	cWB	tWH	ntSH	ntSS		cWW
5	IL_9AXU_014	9AXU	0.1304	2	2	LSU rRNA	G	398	A	399	G	400	U	401	U	402	A	403	A	404	A	405	A	407	G	408	U	409	C	411	*	G	384	A	385	A	386	C	387	cWW	cWS	tSH	cWB	tWH	ntSH	ntSS		cWW
6	IL_9E6Q_018	9E6Q	0.1615	1	1	LSU rRNA	G	526	G	527	G	528	U	529	G	530	A	531	A	532	A	533	A	534	G	535	A	536	C	538	*	G	512	A	513	A	514	C	515	cWW		tSH	cWB	tWH	tSH	tSS	ntHH	cWW
7	IL_4WF9_015	4WF9	0.1658	2	X	LSU rRNA	G	541	A	542	G	543	U	544	G	545	A	546	A	547	A	548	A	550	G	551	A	552	C	554	*	G	527	C	528	A	529	C	530	cWW	cWS	tSH	cWB	tWH	ntSH	tSS		cWW
8	IL_9DFE_012	9DFE	0.1912	2	1A	LSU rRNA	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	*	G	481	A	482	A	483	C	484	cWW	cWS	tSH	cWB	tWH	tSH	tSS	ntHH	cWW
9	IL_8B0X_075	8B0X	0.1885	2	a	LSU rRNA	G	496	A	497	G	498	U	499	G	500	A	501	A	502	A	503	A	505	G	506	A	507	C	509	*	G	481	A	482	A	483	C	484	cWW	cWS	tSH	cWB	tWH	tSH	tSS	ntHH	cWW
10	IL_7A0S_009	7A0S	0.2493	2	X	LSU rRNA	G	506	A	507	G	508	U	509	G	510	A	511	A	512	A	513	A	515	G	516	A	517	C	519	*	G	492	A	493	A	494	C	495	cWW	cWS	tSH	cWB	tWH	ntSH	tSS	ntHH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAGUGAAAAAGUAC*GAAC	2
GAGUCAAAGAGUGC*GGAC	1
GAGUUCAAGAGGGC*GAAC	1
GAGUUAAAUAGUAC*GAAC	1
GGGUGAAAAGAGC*GAAC	1
GAGUGAAAUAGAAC*GCAC	1
GAGUGAAAUAGAGC*GAAC	1
GAGUGAAAAAGAAC*GAAC	1
GAGUGAAAGAGAAC*GAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
AGUGAAAAAGUA*AA	2
AGUCAAAGAGUG*GA	1
AGUUCAAGAGGG*AA	1
AGUUAAAUAGUA*AA	1
GGUGAAAAGAG*AA	1
AGUGAAAUAGAA*CA	1
AGUGAAAUAGAG*AA	1
AGUGAAAAAGAA*AA	1
AGUGAAAGAGAA*AA	1

Release history

Release	4.7
Date	2026-02-25
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (10)
Basepair signature: cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Heat map statistics: Min 0.09 | Avg 0.17 | Max 0.35

Help

Coloring options: Nucleotide numbers

Copyright 2026 BGSU RNA group. Page generated in 0.5826 s