IL_2O44_013

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAGAC*GCUA

Length

9 nucleotides

Bulged bases

2O44|1|A|A|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_013 not in the Motif Atlas

Geometric match to IL_1L9A_005

Geometric discrepancy: 0.3187

The information below is about IL_1L9A_005

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

2O44|1|A|U|598
2O44|1|A|A|599
2O44|1|A|G|600
2O44|1|A|A|601
2O44|1|A|C|602
*
2O44|1|A|G|678
2O44|1|A|C|679
2O44|1|A|U|680
2O44|1|A|A|681

Current chains

Chain A

23S rRNA

Nearby chains