IL_2O44_017

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_017 not in the Motif Atlas

Homologous match to IL_7A0S_018

Geometric discrepancy: 0.1576

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

2O44|1|A|U|716
2O44|1|A|G|717
2O44|1|A|A|718
2O44|1|A|A|719
2O44|1|A|A|720
2O44|1|A|C|721
*
2O44|1|A|G|736
2O44|1|A|C|737
2O44|1|A|G|738
2O44|1|A|G|739
2O44|1|A|A|740
2O44|1|A|G|741

Current chains

Chain A

23S rRNA

Nearby chains