IL_2O44_034

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

2O44|1|A|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_034 not in the Motif Atlas

Geometric match to IL_4WF9_104

Geometric discrepancy: 0.2498

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2O44|1|A|G|1008
2O44|1|A|C|1009
2O44|1|A|U|1010
2O44|1|A|A|1011
2O44|1|A|A|1012
2O44|1|A|G|1013
*
2O44|1|A|C|1164
2O44|1|A|G|1165
2O44|1|A|A|1166
2O44|1|A|A|1167
2O44|1|A|G|1168
2O44|1|A|C|1169

Current chains

Chain A

23S rRNA

Nearby chains