IL_2O44_050

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_050 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.167

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

2O44|1|A|U|1370
2O44|1|A|G|1371
2O44|1|A|A|1372
2O44|1|A|G|1373
2O44|1|A|G|1374
*
2O44|1|A|C|1383
2O44|1|A|G|1384
2O44|1|A|C|1385
2O44|1|A|A|1386
2O44|1|A|G|1387

Current chains

Chain A

23S rRNA

Nearby chains