IL_2O44_055

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAU*AAACGC

Length

11 nucleotides

Bulged bases

2O44|1|A|C|1570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_055 not in the Motif Atlas

Geometric match to IL_8B0X_119

Geometric discrepancy: 0.3947

The information below is about IL_8B0X_119

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

tSH-tWH-tHS

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2O44|1|A|G|1450
2O44|1|A|C|1451
2O44|1|A|U|1452
2O44|1|A|A|1453
2O44|1|A|U|1454
*
2O44|1|A|A|1567
2O44|1|A|A|1568
2O44|1|A|A|1569
2O44|1|A|C|1570
2O44|1|A|G|1571
2O44|1|A|C|1572

Current chains

Chain A

23S rRNA

Nearby chains