IL_2O44_063

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGC*GAUC

Length

7 nucleotides

Bulged bases

2O44|1|A|A|1964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_063 not in the Motif Atlas

Geometric match to IL_4WF9_083

Geometric discrepancy: 0.1543

The information below is about IL_4WF9_083

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

2O44|1|A|G|1760
2O44|1|A|G|1761
2O44|1|A|C|1762
*
2O44|1|A|G|1963
2O44|1|A|A|1964
2O44|1|A|U|1965
2O44|1|A|C|1966

Current chains

Chain A

23S rRNA

Nearby chains