IL_2O44_065

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2O44|1|A|C|1792, 2O44|1|A|C|1808, 2O44|1|A|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_065 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1152

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2O44|1|A|U|1789
2O44|1|A|G|1790
2O44|1|A|C|1791
2O44|1|A|C|1792
2O44|1|A|A|1793
2O44|1|A|A|1794
2O44|1|A|C|1795
*
2O44|1|A|G|1805
2O44|1|A|G|1806
2O44|1|A|A|1807
2O44|1|A|C|1808
2O44|1|A|G|1809
2O44|1|A|U|1810
2O44|1|A|A|1811
2O44|1|A|U|1812
2O44|1|A|A|1813

Current chains

Chain A

23S rRNA

Nearby chains