IL_2O44_073

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2O44|1|A|A|1921, 2O44|1|A|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_073 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.266

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

2O44|1|A|C|1917
2O44|1|A|G|1918
2O44|1|A|A|1919
2O44|1|A|A|1920
2O44|1|A|A|1921
2O44|1|A|U|1922
2O44|1|A|U|1923
2O44|1|A|C|1924
2O44|1|A|C|1925
2O44|1|A|U|1926
2O44|1|A|U|1927
2O44|1|A|G|1928
*
2O44|1|A|C|1944
2O44|1|A|C|1945
2O44|1|A|U|1946
2O44|1|A|G|1947

Current chains

Chain A

23S rRNA

Nearby chains