IL_2O44_103

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

2O44|1|A|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_103 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.2348

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2O44|1|A|U|2615
2O44|1|A|U|2616
2O44|1|A|G|2617
2O44|1|A|A|2618
2O44|1|A|G|2619
*
2O44|1|A|C|2754
2O44|1|A|A|2755
2O44|1|A|A|2756
2O44|1|A|G|2757
2O44|1|A|A|2758
2O44|1|A|U|2759
2O44|1|A|G|2760
2O44|1|A|A|2761
2O44|1|A|G|2762

Current chains

Chain A

23S rRNA

Nearby chains