IL_2O44_128

3D structure

PDB id

2O44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 23S rRNA of the large ribosomal subunit from Deinococcus radiodurans in complex with the macrolide josamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGGAGCGG*CUGCGAAA

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O44_128 not in the Motif Atlas

Homologous match to IL_4WF9_119

Geometric discrepancy: 0.4894

The information below is about IL_4WF9_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00087.1

Basepair signature

cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW

Number of instances in this motif group

1

Unit IDs

2O44|1|A|U|1848
2O44|1|A|G|1849
2O44|1|A|G|1850
2O44|1|A|A|1851
2O44|1|A|G|1852
2O44|1|A|C|1853
2O44|1|A|G|1854
2O44|1|A|G|1855
*
2O44|1|A|C|1862
2O44|1|A|U|1863
2O44|1|A|G|1864
2O44|1|A|C|1865
2O44|1|A|G|1866
2O44|1|A|A|1867
2O44|1|A|A|1868
2O44|1|A|A|1869

Current chains

Chain A

23S rRNA

Nearby chains