Motif IL_00087.1 Version IL_00087.1 of this group appears in releases 3.88 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 5-12 | 5-13 | 6-11 | 7-10 | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4WF9_119 | 4WF9 | 0.0000 | 0 | X | LSU rRNA | A | 1883 | G | 1884 | G | 1885 | A | 1886 | G | 1887 | U | 1888 | G | 1889 | G | 1890 | * | C | 1906 | U | 1907 | A | 1908 | C | 1909 | G | 1910 | A | 1911 | A | 1912 | U | 1913 | cWW | ntSH | ncWW | cWS | ncWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AGGAGUGG*CUACGAAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGAGUG*UACGAA | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-L-R-tSH-L-cWS-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: