IL_2O45_044

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUCGCAUAGACAG*CGAGUGAC

Length

21 nucleotides

Bulged bases

2O45|1|A|U|1056, 2O45|1|A|A|1057, 2O45|1|A|C|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_044 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2879

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

2O45|1|A|G|1050
2O45|1|A|U|1051
2O45|1|A|C|1052
2O45|1|A|G|1053
2O45|1|A|C|1054
2O45|1|A|A|1055
2O45|1|A|U|1056
2O45|1|A|A|1057
2O45|1|A|G|1058
2O45|1|A|A|1059
2O45|1|A|C|1060
2O45|1|A|A|1061
2O45|1|A|G|1062
*
2O45|1|A|C|1120
2O45|1|A|G|1121
2O45|1|A|A|1122
2O45|1|A|G|1123
2O45|1|A|U|1124
2O45|1|A|G|1125
2O45|1|A|A|1126
2O45|1|A|C|1127

Current chains

Chain A

23S rRNA

Nearby chains