IL_2O45_073

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

2O45|1|A|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_073 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.3381

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

2O45|1|A|U|1833
2O45|1|A|G|1834
2O45|1|A|C|1835
*
2O45|1|A|G|1880
2O45|1|A|U|1881
2O45|1|A|G|1882
2O45|1|A|A|1883
2O45|1|A|A|1884

Current chains

Chain A

23S rRNA

Nearby chains