IL_2O45_092

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAAG*CUGUAG

Length

10 nucleotides

Bulged bases

2O45|1|A|U|2298, 2O45|1|A|A|2299

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_092 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3171

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65740.2

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

4

Unit IDs

2O45|1|A|C|2276
2O45|1|A|A|2277
2O45|1|A|A|2278
2O45|1|A|G|2279
*
2O45|1|A|C|2295
2O45|1|A|U|2296
2O45|1|A|G|2297
2O45|1|A|U|2298
2O45|1|A|A|2299
2O45|1|A|G|2300

Current chains

Chain A

23S rRNA

Nearby chains