IL_2O45_094

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GUAC*GGC

Length

7 nucleotides

Bulged bases

2O45|1|A|A|2381

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_094 not in the Motif Atlas

Geometric match to IL_5TBW_145

Geometric discrepancy: 0.2286

The information below is about IL_5TBW_145

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

2O45|1|A|G|2379
2O45|1|A|U|2380
2O45|1|A|A|2381
2O45|1|A|C|2382
*
2O45|1|A|G|2393
2O45|1|A|G|2394
2O45|1|A|C|2395

Current chains

Chain A

23S rRNA

Nearby chains