IL_2O45_098

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_098 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.2335

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

2O45|1|A|C|2445
2O45|1|A|C|2446
2O45|1|A|G|2447
2O45|1|A|A|2448
2O45|1|A|G|2449
*
2O45|1|A|C|2459
2O45|1|A|G|2460
2O45|1|A|G|2461
2O45|1|A|C|2462
2O45|1|A|G|2463

Current chains

Chain A

23S rRNA

Nearby chains