IL_2O45_106

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

2O45|1|A|G|2757, 2O45|1|A|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_106 not in the Motif Atlas

Homologous match to IL_4WF9_099

Geometric discrepancy: 0.2434

The information below is about IL_4WF9_099

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

2O45|1|A|U|2615
2O45|1|A|U|2616
2O45|1|A|G|2617
2O45|1|A|A|2618
2O45|1|A|G|2619
*
2O45|1|A|C|2754
2O45|1|A|A|2755
2O45|1|A|A|2756
2O45|1|A|G|2757
2O45|1|A|A|2758
2O45|1|A|U|2759
2O45|1|A|G|2760
2O45|1|A|A|2761
2O45|1|A|G|2762

Current chains

Chain A

23S rRNA

Nearby chains