IL_2O45_107

3D structure

PDB id

2O45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 23S rRNA of the large ribosomal subunit from Deinococcus Radiodurans in complex with the macrolide RU-69874

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

2O45|1|A|G|2634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2O45_107 not in the Motif Atlas

Geometric match to IL_4V9F_019

Geometric discrepancy: 0.3233

The information below is about IL_4V9F_019

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2O45|1|A|C|2631
2O45|1|A|U|2632
2O45|1|A|A|2633
2O45|1|A|G|2634
2O45|1|A|U|2635
2O45|1|A|A|2636
2O45|1|A|C|2637
*
2O45|1|A|G|2642
2O45|1|A|G|2643
2O45|1|A|A|2644
2O45|1|A|C|2645
2O45|1|A|C|2646
2O45|1|A|G|2647

Current chains

Chain A

23S rRNA

Nearby chains