IL_2OE6_001

3D structure

PDB id

2OE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.4A X-ray crystal structure of unliganded RNA fragment GGGCGUCGCUAGUACC/CGGUACUAAAAGUCGCC containing the human ribosomal decoding A site: RNA construct with 5'-overhang

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OE6_001 not in the Motif Atlas

Geometric match to IL_2OE8_001

Geometric discrepancy: 0.0537

The information below is about IL_2OE8_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

2OE6|1|A|G|1405
2OE6|1|A|U|1406
2OE6|1|A|C|1407
*
2OE6|1|B|G|1494
2OE6|1|B|U|1495
2OE6|1|B|C|1496

Current chains

Chain A

RNA (5'-R(*GP*GP*GP*CP*GP*UP*CP*GP*CP*UP*AP*GP*UP*AP*CP*C)-3')

Chain B

RNA (5'-R(*CP*GP*GP*UP*AP*CP*UP*AP*AP*AP*AP*GP*UP*CP*GP*CP*C)-3')

Nearby chains