IL_2OGO_029

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUGUAG*CGAAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_029 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3635

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|C|870
2OGO|1|0|U|871
2OGO|1|0|G|872
2OGO|1|0|U|873
2OGO|1|0|A|874
2OGO|1|0|G|875
*
2OGO|1|0|C|927
2OGO|1|0|G|928
2OGO|1|0|A|929
2OGO|1|0|A|930
2OGO|1|0|G|931
2OGO|1|0|G|932

Current chains

Chain 0

23S ribosomal RNA

Nearby chains