IL_2OGO_043

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CAUAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

2OGO|1|0|U|1056, 2OGO|1|0|A|1057, 2OGO|1|0|G|1058, 2OGO|1|0|A|1122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2OGO|1|0|C|1054
2OGO|1|0|A|1055
2OGO|1|0|U|1056
2OGO|1|0|A|1057
2OGO|1|0|G|1058
2OGO|1|0|A|1059
2OGO|1|0|C|1060
2OGO|1|0|A|1061
2OGO|1|0|G|1062
2OGO|1|0|C|1063
*
2OGO|1|0|G|1118
2OGO|1|0|U|1119
2OGO|1|0|C|1120
2OGO|1|0|G|1121
2OGO|1|0|A|1122
2OGO|1|0|G|1123

Current chains

Chain 0

23S ribosomal RNA

Nearby chains