IL_2OGO_049

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UAC*GAG

Length

6 nucleotides

Bulged bases

2OGO|1|0|A|1233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_049 not in the Motif Atlas

Homologous match to IL_7A0S_044

Geometric discrepancy: 0.1619

The information below is about IL_7A0S_044

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

2OGO|1|0|U|1232
2OGO|1|0|A|1233
2OGO|1|0|C|1234
*
2OGO|1|0|G|1241
2OGO|1|0|A|1242
2OGO|1|0|G|1243

Current chains

Chain 0

23S ribosomal RNA

Nearby chains