IL_2OGO_052

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_052 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1336

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2OGO|1|0|C|1364
2OGO|1|0|U|1365
2OGO|1|0|A|1366
2OGO|1|0|A|1367
2OGO|1|0|G|1368
*
2OGO|1|0|C|1389
2OGO|1|0|G|1390
2OGO|1|0|A|1391
2OGO|1|0|U|1392
2OGO|1|0|G|1393

Current chains

Chain 0

23S ribosomal RNA

Nearby chains