IL_2OGO_053

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

GUGAGG*CGCAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_053 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2489

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|G|1369
2OGO|1|0|U|1370
2OGO|1|0|G|1371
2OGO|1|0|A|1372
2OGO|1|0|G|1373
2OGO|1|0|G|1374
*
2OGO|1|0|C|1383
2OGO|1|0|G|1384
2OGO|1|0|C|1385
2OGO|1|0|A|1386
2OGO|1|0|G|1387
2OGO|1|0|C|1388

Current chains

Chain 0

23S ribosomal RNA

Nearby chains