IL_2OGO_069

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2OGO|1|0|C|1792, 2OGO|1|0|C|1808, 2OGO|1|0|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_069 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.2598

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|U|1789
2OGO|1|0|G|1790
2OGO|1|0|C|1791
2OGO|1|0|C|1792
2OGO|1|0|A|1793
2OGO|1|0|A|1794
2OGO|1|0|C|1795
*
2OGO|1|0|G|1805
2OGO|1|0|G|1806
2OGO|1|0|A|1807
2OGO|1|0|C|1808
2OGO|1|0|G|1809
2OGO|1|0|U|1810
2OGO|1|0|A|1811
2OGO|1|0|U|1812
2OGO|1|0|A|1813

Current chains

Chain 0

23S ribosomal RNA

Nearby chains