IL_2OGO_071

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

2OGO|1|0|A|1883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_071 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3007

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

2OGO|1|0|U|1833
2OGO|1|0|G|1834
2OGO|1|0|C|1835
*
2OGO|1|0|G|1880
2OGO|1|0|U|1881
2OGO|1|0|G|1882
2OGO|1|0|A|1883
2OGO|1|0|A|1884

Current chains

Chain 0

23S ribosomal RNA

Nearby chains