IL_2OGO_074

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_074 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3243

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

2OGO|1|0|U|1848
2OGO|1|0|G|1849
2OGO|1|0|G|1850
2OGO|1|0|A|1851
2OGO|1|0|G|1852
*
2OGO|1|0|C|1865
2OGO|1|0|G|1866
2OGO|1|0|A|1867
2OGO|1|0|A|1868
2OGO|1|0|A|1869

Current chains

Chain 0

23S ribosomal RNA

Nearby chains