IL_2OGO_078

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

2OGO|1|0|A|1921, 2OGO|1|0|U|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_078 not in the Motif Atlas

Homologous match to IL_7A0S_072

Geometric discrepancy: 0.1992

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

2OGO|1|0|C|1917
2OGO|1|0|G|1918
2OGO|1|0|A|1919
2OGO|1|0|A|1920
2OGO|1|0|A|1921
2OGO|1|0|U|1922
2OGO|1|0|U|1923
2OGO|1|0|C|1924
2OGO|1|0|C|1925
2OGO|1|0|U|1926
2OGO|1|0|U|1927
2OGO|1|0|G|1928
*
2OGO|1|0|C|1944
2OGO|1|0|C|1945
2OGO|1|0|U|1946
2OGO|1|0|G|1947

Current chains

Chain 0

23S ribosomal RNA

Nearby chains