IL_2OGO_082

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

2OGO|1|0|G|2217

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_082 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1851

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.3

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

2OGO|1|0|U|2064
2OGO|1|0|A|2065
2OGO|1|0|G|2066
*
2OGO|1|0|C|2215
2OGO|1|0|G|2216
2OGO|1|0|G|2217
2OGO|1|0|G|2218

Current chains

Chain 0

23S ribosomal RNA

Nearby chains