IL_2OGO_100

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

2OGO|1|0|A|2551, 2OGO|1|0|C|2552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_100 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.2277

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

2OGO|1|0|C|2491
2OGO|1|0|G|2492
*
2OGO|1|0|C|2550
2OGO|1|0|A|2551
2OGO|1|0|C|2552
2OGO|1|0|G|2553

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3