IL_2OGO_102

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

2OGO|1|0|A|2581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_102 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.2972

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

2OGO|1|0|C|2570
2OGO|1|0|G|2571
*
2OGO|1|0|C|2580
2OGO|1|0|A|2581
2OGO|1|0|G|2582

Current chains

Chain 0

23S ribosomal RNA

Nearby chains