IL_2OGO_108

3D structure

PDB id

2OGO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit from Deinococcus radiodurans complexed with the pleuromutilin derivative retapamulin (SB-275833)

Experimental method

X-RAY DIFFRACTION

Resolution

3.66 Å

Loop

Sequence

CUG*CACAUG

Length

9 nucleotides

Bulged bases

2OGO|1|0|U|2693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2OGO_108 not in the Motif Atlas

Geometric match to IL_5VSU_002

Geometric discrepancy: 0.3628

The information below is about IL_5VSU_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73028.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

2OGO|1|0|C|2674
2OGO|1|0|U|2675
2OGO|1|0|G|2676
*
2OGO|1|0|C|2689
2OGO|1|0|A|2690
2OGO|1|0|C|2691
2OGO|1|0|A|2692
2OGO|1|0|U|2693
2OGO|1|0|G|2694

Current chains

Chain 0

23S ribosomal RNA

Nearby chains